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Patient Model - Molecular, Cellular, Tissue, Organ, Systemic, Clinical scales
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1) Ovarian Follicle Depletion
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Patient Presentation:
A 32-year-old woman presents with irregular periods for the past year, severe hot flashes, and difficulty conceiving for 2 years.
- History of autoimmune thyroiditis.
- No significant gynecological surgeries or infections.

Key Diagnosis: Determines ovarian reserve and function.
Diagnostic Methods

Hormonal Assays:

a) Anti-Müllerian Hormone (AMH): Reflects ovarian reserve (low levels indicate diminished reserve).

b) Follicle-Stimulating Hormone (FSH): Elevated levels suggest poor ovarian function.

c) Estradiol (E2): Assessed on day 2-5 of the menstrual cycle; elevated levels can indicate reduced ovarian reserve.

Ultrasound Imaging:

Antral Follicle Count (AFC): Transvaginal ultrasound counts small follicles (2-10 mm) in both ovaries; fewer follicles suggest diminished reserve.

Ovarian Volume Assessment:

Done using transvaginal ultrasound; reduced ovarian volume may indicate follicle depletion.

Dynamic Testing:

Clomiphene Citrate Challenge Test (CCCT): Evaluates ovarian response by measuring FSH levels before and after administering clomiphene citrate.

Sample Values

Molecular Level:

  • AMH: 0.2 ng/mL (Low, indicating diminished ovarian reserve).
  • Estradiol: 95 pg/mL (Elevated due to compromised ovarian function).

Cellular Level:

  • Ovarian granulosa cell apoptosis rate: Increased in follicle biopsy.

Tissue Level:

  • Antral Follicle Count (AFC): 3 (Normal range: 6-10 in this age group).
  • Ovarian stromal volume reduced on transvaginal ultrasound.

Organ Level:

  • Ovarian volume: 2 cm³ (Normal: >4 cm³).

Systemic Level:

  • FSH: 18 mIU/mL (Elevated; normal: <10 mIU/mL).
  • LH: 12 mIU/mL (Elevated; normal: <10 mIU/mL).

Epidemiological Level:

Incidence of premature ovarian insufficiency in women under 40: ~1%.

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2) Uterine Scarring (Asherman’s Syndrome)
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Patient Presentation:
A 28-year-old woman with secondary infertility after a D&C procedure for a missed miscarriage.
- Complains of light menstrual flow and dysmenorrhea.
- History of recurrent intrauterine infections.

Key Diagnosis: Determines ovarian reserve and function.
Diagnostic Methods

Hysteroscopy:

  • Gold standard for directly visualizing and assessing intrauterine adhesions and scarring.

Sonohysterography (Saline Infusion Sonography):

  • Uses saline infusion during transvaginal ultrasound to identify intrauterine adhesions or irregularities.

Hysterosalpingography (HSG):

  • X-ray with contrast to outline the uterine cavity; detects structural abnormalities and adhesions.

MRI of the Uterus:

  • Provides detailed imaging for more severe cases of uterine scarring or for preoperative planning.

Endometrial Biopsy:

Evaluates endometrial thickness and health for functional assessment.

Sample Values

Molecular Level:

  • Transforming growth factor-beta (TGF-β): Elevated, associated with fibrosis.
  • Vascular endothelial growth factor (VEGF): Reduced in endometrial biopsy.

Cellular Level:

  • Fibroblast proliferation rate: Elevated in scar tissue.

Tissue Level:

  • Endometrial thickness: 4 mm on sonohysterography (Normal: >7 mm during the proliferative phase).
  • Presence of dense intrauterine adhesions on hysteroscopy.

Organ Level:

  • Uterine cavity distorted with synechiae.

Systemic Level:

  • Hormone levels (FSH, LH): Normal; absence of systemic endocrine dysfunction.

Epidemiological Level:

Prevalence of Asherman’s Syndrome after D&C: ~1.5%.


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3) Testicular Failure
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Patient Presentation:
A 35-year-old man with azoospermia diagnosed during fertility evaluation.
- Reports reduced libido and fatigue for 1 year.
- History of mumps orchitis during adolescence.

Key Diagnosis: Determines the presence and functionality of spermatogenic cells.
Diagnostic Methods

Hormonal Assays:

  • Testosterone: Low levels may indicate hypogonadism.
  • FSH and LH: Elevated FSH levels suggest primary testicular failure.

Semen Analysis:

  • Evaluates sperm count, motility, and morphology. Absence of sperm suggests azoospermia.

Testicular Ultrasound:

  • Assesses testicular volume, structure, and the presence of abnormalities such as varicocele or microcalcifications.

Testicular Biopsy:

  • Detects the presence of spermatogenic cells and evaluates the degree of spermatogenesis.

Genetic Testing:

Identifies chromosomal abnormalities (e.g., Klinefelter syndrome, Y-chromosome microdeletions) causing testicular failure.

Sample Values

Molecular Level:

  • Testosterone: 2.1 ng/mL (Low; normal: >3.5 ng/mL).
  • FSH: 24 mIU/mL (High; normal: 1-10 mIU/mL).
  • LH: 12 mIU/mL (Elevated; normal: 1-8 mIU/mL).

Cellular Level:

  • Sertoli cell degeneration noted on testicular biopsy.
  • Germ cell apoptosis rates elevated.

Tissue Level:

  • Loss of spermatogenic cells in seminiferous tubules.
  • Thickened basement membrane of seminiferous tubules.

Organ Level:

  • Testicular volume: 8 mL (Normal: 15-20 mL).

Systemic Level:

  • Decreased sperm count in semen analysis: 0 sperm (azoospermia).

Epidemiological Level:

Prevalence of non-obstructive azoospermia: ~10-15% of infertile men.

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4) Endometrial Dysfunction
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Patient Presentation:
A 30-year-old woman with recurrent implantation failure despite three cycles of IVF.
- Complains of heavy, irregular periods and pelvic pain.
- No significant infections or surgeries.

Key Diagnosis: Determines ovarian reserve and function.
Diagnostic Methods

Endometrial Thickness Measurement:

  • Assessed using transvaginal ultrasound; thin endometrium (<7 mm) is associated with poor implantation.

Sonohysterography:

  • Highlights abnormalities in the endometrial cavity, such as polyps, fibroids, or scarring.

Endometrial Biopsy:

  • Provides histological evaluation for chronic inflammation, infection, or insufficient development.

Doppler Ultrasound:

Assesses blood flow to the endometrium, which correlates with endometrial receptivity.

Sample Values

Molecular Level:

  • Pro-inflammatory cytokines (IL-6, TNF-alpha): Elevated in endometrial biopsy.
  • Integrin αvβ3 (implantation marker): Decreased expression.

Cellular Level:

  • Endometrial epithelial cell density: Reduced.

Tissue Level:

  • Endometrial thickness: 5 mm on Day 10 of the cycle (Normal: 8-14 mm).

Organ Level:

  • Uterine artery blood flow: Resistance Index (RI) of 0.8 (Normal: <0.6).

Systemic Level:

  • Hormone levels (FSH, LH, E2): Normal.

Epidemiological Level:

Prevalence of thin endometrium in recurrent implantation failure: ~10-20%.


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5) Damage Due to Cancer Treatments
Lorem Ipsum has been the industry's standard dummy text ever since the 1500s, when an unknown printer took a galley of type and scrambled it to make a type specimen book.
Patient Presentation:
A 25-year-old woman with ovarian insufficiency after chemotherapy for Hodgkin’s lymphoma.
- Reports amenorrhea for 1 year post-treatment.
- No prior fertility preservation.

Key Diagnosis: Evaluates the extent of gonadal damage after chemotherapy or radiotherapy.
Diagnostic Methods

AMH and FSH Levels:

  • Assess ovarian reserve and function in women post-treatment.

Antral Follicle Count (AFC):

  • Quantifies the ovarian reserve using transvaginal ultrasound.

Testicular Biopsy:

  • Determines residual spermatogenesis in men.

MRI or CT Scans:

Evaluate pelvic or testicular anatomy for structural damage.

Sample Values

Molecular Level:

  • AMH: 0.1 ng/mL (Severely low).
  • Reactive oxygen species (ROS): Elevated in ovarian tissue.

Cellular Level:

  • Follicular atresia and increased apoptosis in ovarian biopsy.

Tissue Level:

  • Antral Follicle Count (AFC): 0.
  • Ovarian stromal fibrosis visible on ultrasound.

Organ Level:

  • Ovarian volume: <2 cm³ (Significantly reduced).

Systemic Level:

  • FSH: 40 mIU/mL (High; indicative of ovarian failure).

Epidemiological Level:

Incidence of premature ovarian insufficiency post-chemotherapy: ~30%.

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6) Structural Abnormalities
Lorem Ipsum has been the industry's standard dummy text ever since the 1500s, when an unknown printer took a galley of type and scrambled it to make a type specimen book.
Patient Presentation:
Name: Mrs. A, 29 years old
Chief Complaint: Recurrent pregnancy loss and difficulty conceiving for 2 years.
History:
- Regular menstrual cycles with normal flow.
- No significant gynecological infections or surgeries.
- Underwent hysterosalpingography (HSG), which suggested a uterine anomaly.
Suspected Diagnosis: Uterine Septum (Congenital Müllerian Anomaly)

Key Diagnosis: Detects congenital or acquired structural abnormalities that impair function.
Diagnostic Methods

3D Transvaginal Ultrasound:

  • Identifies uterine anomalies, such as septa or bicornuate uterus.

MRI:

Provides detailed imaging of reproductive anatomy for surgical planning.

Sample Values

Molecular Level:

  • HOXA10 & HOXA11 gene expression: Reduced (indicative of impaired uterine receptivity).
  • VEGF (Vascular Endothelial Growth Factor): Decreased (impaired endometrial blood flow).

Cellular Level:

  • Endometrial cell proliferation rate: Lower in septal region (deficient response to hormonal signaling).
  • Fibrotic markers (TGF-β, Collagen Type I): Increased in septal tissue.

Tissue Level:

  • Endometrial thickness: 6 mm in septal region (Normal range: 8-12 mm).
  • Histopathology of Septal Tissue: Poor glandular development, reduced vascularization.

Organ Level:

  • 3D Transvaginal Ultrasound Findings: Uterine septum measuring 12 mm (Normal: No septum).
  • MRI Findings: Fundal indentation >15 mm (consistent with septate uterus).

Systemic Level:

  • Hormonal Profile: Normal estrogen and progesterone levels.
  • Menstrual Cycle Regularity: Normal but suspected poor implantation due to septum.

Epidemiological Level:

Associated Risk: Septate uterus linked to a 44% miscarriage rate without surgical correction.

Prevalence of Uterine Septum: ~3-7% of women in the general population.


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7) Cellular or Molecular Analysis
Lorem Ipsum has been the industry's standard dummy text ever since the 1500s, when an unknown printer took a galley of type and scrambled it to make a type specimen book.
Patient Presentation:

Name: Mr. B, 34 years old
Chief Complaint: Infertility for 3 years, confirmed non-obstructive azoospermia.
History:Normal libido and secondary sexual characteristics.
No history of infections or surgeries.
Genetic evaluation pending.
Suspected Diagnosis: Y-Chromosome Microdeletion (Yq11 AZF Region Deletion)
Diagnostic Methods

Advanced Techniques:

Evaluates cellular integrity and pathological changes in ovarian, uterine, or testicular tissues.

Proteomics and Genomics:

Analyze molecular markers of tissue damage or infertility.

Flow Cytometry:

Quantifies specific cell types, such as stem cells or spermatogenic cells.

Tissue Staining and Histology:

Sample Values

Molecular Level:

  • Sperm DNA Fragmentation Index (DFI): 48% (Severe DNA damage; normal: <15%).
  • AZFa, AZFb, AZFc Gene Deletions: Present in AZFb region.
  • Testosterone Biosynthesis Genes (CYP17A1, HSD17B3): Normal.

Cellular Level:

  • Germ Cell Density in Testicular Biopsy: Severely reduced.
  • Sertoli Cell-Only Syndrome: Confirmed on histology.

Tissue Level:

  • Spermatogenesis: Completely absent in seminiferous tubules.
  • Testicular Fibrosis: Moderate interstitial fibrosis observed.

Organ Level:

  • Testicular Volume (Ultrasound): 9 mL (Normal: 15-25 mL).
  • Scrotal Doppler Study: Normal vascular supply, no varicocele.

Systemic Level:

  • FSH: 22 mIU/mL (Elevated; normal: 1-10 mIU/mL).
  • LH: 11 mIU/mL (Elevated; normal: 1-8 mIU/mL).
  • Testosterone: 4.2 ng/mL (Normal but at the lower range).

Epidemiological Level:

Chance of Sperm Retrieval in AZFb Deletion: <5% with TESE (Testicular Sperm Extraction).

Prevalence of Y-Chromosome Microdeletion in Azoospermic Men: ~10-15%.

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